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| 30.09.2016 | 18:30 | 1. FC Nürnberg | - | 1. FC Union Berlin | 2:0 (1:0) | |
| 18:30 | SV Sandhausen | - | Dynamo Dresden | 2:0 (2:0) | ||
| 18:30 | Erzgebirge Aue | - | VfL Bochum | 2:4 (2:2) | ||
| 01.10.2016 | 13:00 | Hannover 96 | - | FC St. Pauli | 2:0 (0:0) | |
| 13:00 | Fortuna Düsseldorf | - | Karlsruher SC | 1:1 (1:0) | ||
| 02.10.2016 | 13:30 | 1. FC Kaiserslautern | - | Arminia Bielefeld | 0:0 (0:0) | |
| 13:30 | 1. FC Heidenheim 1846 | - | Eintracht Braunschweig | 1:1 (1:0) | ||
| 13:30 | Würzburger Kickers | - | TSV 1860 München | 2:0 (1:0) | ||
| 03.10.2016 | 20:15 | VfB Stuttgart | - | SpVgg Greuther Fürth | 4:0 (3:0) |
| # | Team | GS. | W. | G. | V. | Dp. | Ds. | P. | |
|---|---|---|---|---|---|---|---|---|---|
| 1 |
|
Eintracht Braunschweig | 8 | 6 | 1 | 1 | 17:7 | 10 | 19 |
| 2 |
|
Hannover 96 | 8 | 5 | 2 | 1 | 16:7 | 9 | 17 |
| 3 |
|
VfB Stuttgart | 8 | 5 | 1 | 2 | 13:6 | 7 | 16 |
| 4 |
|
1. FC Heidenheim 1846 | 8 | 4 | 3 | 1 | 11:5 | 6 | 15 |
| 5 |
|
Würzburger Kickers | 8 | 4 | 2 | 2 | 13:7 | 6 | 14 |
| 6 |
|
1. FC Union Berlin | 8 | 4 | 2 | 2 | 16:11 | 5 | 14 |
| 7 |
|
VfL Bochum | 8 | 3 | 3 | 2 | 14:15 | -1 | 12 |
| 8 |
|
SpVgg Greuther Fürth | 8 | 3 | 2 | 3 | 9:15 | -6 | 11 |
| 9 |
|
Fortuna Düsseldorf | 8 | 2 | 4 | 2 | 9:8 | 1 | 10 |
| 10 |
|
SV Sandhausen | 8 | 2 | 3 | 3 | 9:9 | 0 | 9 |
| 11 |
|
Dynamo Dresden | 8 | 2 | 3 | 3 | 8:13 | -5 | 9 |
| 12 |
|
Karlsruher SC | 8 | 1 | 5 | 2 | 5:8 | -3 | 8 |
| 13 |
|
1. FC Nürnberg | 8 | 2 | 2 | 4 | 14:18 | -4 | 8 |
| 14 |
|
TSV 1860 München | 8 | 2 | 2 | 4 | 6:10 | -4 | 8 |
| 15 |
|
Erzgebirge Aue | 8 | 2 | 1 | 5 | 10:13 | -3 | 7 |
| 16 |
|
1. FC Kaiserslautern | 8 | 1 | 3 | 4 | 4:11 | -7 | 6 |
| 17 |
|
Arminia Bielefeld | 8 | 0 | 5 | 3 | 10:14 | -4 | 5 |
| 18 |
|
FC St. Pauli | 8 | 1 | 2 | 5 | 6:13 | -7 | 5 |
| Promotie | |
| Promotie en degradatie | |
| Promotie en degradatie | |
| Degradatie |
